Staphylococcus aureus subsp aureus str MSHR1132

The prediction was done using a set of srn genes identified from SRD RNA-seq analysis.

Numbers of SRD’S predicted srn sequences =

subject_seq_id	identity	length	mismatch	gapopen	query_start	query_end	subject_start	subject_end	evalue	bitscore
srn_4470_RsaX28	94.34	1184	52	15	2385393	2386571	1	1174	0.0	1801
srn_1670_Teg20as	89.24	994	92	13	698212	699197	20	1006	0.0	1229
srn_3790_sRNA301	100.00	532	0	0	1969799	1970330	1	532	0.0	983
srn_0770_Teg18as	87.31	843	107	0	342262	343104	23	865	0.0	965
srn_3910_RNAIII	98.07	518	8	1	2025664	2026181	1	516	0.0	900
srn_1580_sbrC	96.16	495	14	4	662329	662821	288	779	0.0	804
srn_1590_rsaC	96.15	493	14	4	662331	662821	1	490	0.0	800
srn_5020_sRNA401	88.73	568	56	6	2663566	2664131	1	562	0.0	688
srn_0860_RsaOB	95.26	422	19	1	387624	388045	1	421	0.0	667
tmRNA	98.89	359	4	0	827279	827637	1	359	0.0	641
srn_4330_Teg36as	91.87	455	34	1	2297793	2298247	1	452	3e-180	632
srn_3840_sprG1	99.68	309	1	0	1974330	1974638	1	309	3e-160	566
srn_2250_sprG4	94.31	369	21	0	982253	982621	1	369	3e-160	566
srn_4770_sRNA385	95.20	354	11	4	2548678	2549031	85	432	6e-157	555
RNaseP	96.37	331	12	0	1446127	1446457	105	435	4e-154	545
srn_0280_sRNA16	92.74	372	27	0	101350	101721	1	372	6e-152	538
srn_4830_Sau6072	98.61	288	4	0	2562452	2562739	1	288	1e-143	510
4.5S	99.60	253	1	0	480432	480684	1	253	4e-129	462
srn_2880_RsaOQ	89.16	369	32	7	1352271	1352634	1	366	2e-126	453
srn_4520_RsaX20	96.50	257	7	2	2422878	2423133	7	262	2e-117	424
srn_2230_sprG2	96.68	241	7	1	981997	982236	1	241	3e-110	399
srn_4550_sprA2	97.00	233	7	0	2441050	2441282	1	233	5e-108	392
6S	99.08	218	2	0	1621344	1621561	1	218	5e-108	392
srn_3320_sRNA264	95.10	245	12	0	1667762	1668006	1	245	2e-106	387
srn_3300_Teg70	86.96	345	35	8	1650712	1651052	1	339	4e-104	379
srn_3580_SprA1	99.52	207	1	0	1827248	1827454	1	207	1e-103	377
srn_3950_Teg16	96.46	226	6	2	2044000	2044224	1	225	7e-102	372
srn_4190_sRNA342	91.51	259	22	0	2204411	2204669	1	259	2e-97	357
srn_0930_Teg76	94.67	225	10	2	412208	412432	1	223	1e-94	348
srn_0260_Teg15as	92.21	244	19	0	88749	88992	1	244	4e-94	346
srn_2130_rsaE	90.19	265	23	3	950987	951249	5	268	5e-93	342
srn_1490_Sau6477	95.00	220	5	4	606601	606818	1	216	2e-92	340
srn_1210_sRNA106	96.12	206	7	1	502584	502789	1	205	9e-91	335
srn_0030_Teg35	93.39	227	13	2	12506	12731	1	226	9e-91	335
srn_3350_sRNA266	90.65	246	23	0	1698956	1699201	1	246	1e-88	327
srn_3490_RsaOE	93.21	221	13	2	1788349	1788568	1	220	2e-87	324
srn_2970_sRNA235	91.18	238	21	0	1396480	1396717	3	240	2e-87	324
srn_1640_rsaD	99.43	176	1	0	678633	678808	1	176	2e-86	320
srn_2950_Teg6	98.26	172	3	0	1377875	1378046	1	172	9e-81	302
srn_1810_Teg51	93.17	205	13	1	765956	766159	2	206	3e-80	300
srn_2450_Sau6229	88.43	242	23	4	1105796	1106035	1	239	3e-76	287
srn_5010_Teg33	95.95	173	7	0	2658216	2658388	24	196	1e-74	281
srn_3190_Teg68	92.31	195	14	1	1610283	1610476	1	195	5e-73	276
srn_3040_Sau50	99.32	148	1	0	1473227	1473374	1	148	9e-71	268
srn_4460_Teg26	95.78	166	6	1	2375311	2375476	1	165	3e-70	267
srn_2550_Teg80	97.44	156	4	0	1147676	1147831	4	159	3e-70	267
srn_4670_RsaOT	99.32	146	1	0	2492633	2492778	1	146	1e-69	265
srn_4160_Sau25	95.21	167	7	1	2183842	2184007	1	167	4e-69	263
srn_4160_Sau25	96.58	117	1	3	2061202	2061315	1	117	2e-47	191
srn_4160_Sau25	98.10	105	1	1	485060	485163	105	1	1e-44	182
srn_4160_Sau25	98.04	102	1	1	1889486	1889586	1	102	6e-43	176
srn_4160_Sau25	97.12	104	1	2	529507	529608	104	1	2e-42	174
srn_1080_RsaX05	89.81	206	19	2	448926	449130	1	205	4e-69	263
srn_3280_sRNA260	85.21	257	34	3	1644465	1644721	7	259	2e-68	261
srn_3260_Teg69	93.26	178	10	2	1624889	1625064	96	273	2e-68	261
srn_2560_sRNA212	83.06	307	33	15	1153550	1153847	22	318	2e-68	261
srn_4000_sRNA326	85.37	246	36	0	2118813	2119058	1	246	7e-67	255
srn_3660_Sau6515	88.26	213	25	0	1871183	1871395	1	213	7e-67	255
srn_3550_Teg75	99.30	142	0	1	1813672	1813812	4	145	7e-67	255
srn_1510_rsaA	98.60	143	2	0	618569	618711	1	143	3e-66	254
srn_0050_Teg1	86.86	236	20	11	15742	15973	1	229	3e-66	254
srn_3800_sprD	97.93	145	3	0	1971198	1971342	1	145	9e-66	252
srn_3050_sRNA242	94.48	163	9	0	1477209	1477371	1	163	9e-66	252
srn_3830_sprF1	99.28	138	1	0	1974329	1974466	1	138	3e-65	250
srn_3820_SprX	96.69	151	0	2	1972092	1972242	1	146	4e-64	246
srn_3610_SprC	97.89	142	3	0	1837258	1837399	1	142	4e-64	246
srn_2330_Sau11	95.42	153	7	0	1034503	1034655	1	153	2e-63	244
srn_1070_Sau41	95.45	154	6	1	448223	448375	1	154	2e-63	244
srn_4740_sprA3	85.65	237	26	5	2538632	2538867	1	230	6e-63	243
srn_0440_rsaK	88.68	212	5	7	196252	196444	1	212	2e-62	241
srn_3780_Teg13	95.92	147	6	0	1965650	1965796	1	147	7e-62	239
srn_0510_rsaG	99.25	133	0	1	226197	226328	5	137	7e-62	239
srn_3860_sRNA315	100.00	122	0	0	2009598	2009719	1	122	6e-58	226
srn_2200_Sau6053	93.75	144	9	0	971683	971826	2	145	3e-55	217
srn_2340_Sau59	97.60	125	3	0	1036135	1036259	1	125	1e-54	215
srn_2500_sRNA207	81.92	260	35	5	1333175	1333434	248	1	6e-53	209
srn_2500_sRNA207	80.00	170	24	9	394887	395053	138	300	4e-25	117
srn_2500_sRNA207	80.37	163	23	8	612074	612233	138	294	1e-24	115
srn_4390_rsaOG	100.00	111	0	0	2312992	2313102	1	111	7e-52	206
srn_2660_sRNA219	91.95	149	9	2	1243805	1243951	1	148	7e-52	206
srn_1350_Teg45	80.20	298	40	13	549017	549302	1	291	7e-52	206
srn_4420_Teg25	96.69	121	4	0	2326806	2326926	1	121	9e-51	202
srn_1910_rsaH	95.97	124	5	0	813429	813552	1	124	9e-51	202
srn_2240_sprF2	97.41	116	3	0	982179	982294	1	116	1e-49	198
srn_3600_SprB	95.73	117	3	2	1834236	1834351	1	116	3e-46	187
srn_4120_Teg20	88.67	150	15	2	2160416	2160564	1	149	1e-44	182
srn_2740_Teg108	100.00	98	0	0	1290305	1290402	1	98	1e-44	182
srn_4590_Teg28	91.47	129	10	1	2463621	2463749	1	128	6e-43	176
srn_0880_Sau5971	100.00	95	0	0	393264	393358	2	96	6e-43	176
srn_2400_Teg37as	95.41	109	5	0	1079432	1079540	1	109	2e-42	174
srn_1760_sRNA149	91.47	129	8	3	744566	744693	1	127	2e-42	174
srn_2580_Teg103	90.08	131	12	1	1164073	1164202	15	145	1e-40	169
srn_3870_sRNA296	93.04	115	5	2	1333176	1333287	53	167	1e-39	165
srn_3870_sRNA296	84.55	123	9	7	612073	612189	167	49	5e-24	113
srn_3870_sRNA296	84.55	123	9	7	394886	395002	167	49	5e-24	113
srn_4300_sRNA349	92.92	113	5	1	1116319	1116431	263	154	2e-38	161
srn_4300_sRNA349	89.57	115	10	1	1333232	1333346	152	264	2e-33	145
srn_4300_sRNA349	90.00	100	8	2	1734124	1734223	167	264	2e-28	128
srn_4220_sRNA345	100.00	87	0	0	2230174	2230260	1	87	2e-38	161
srn_4220_sRNA345	100.00	87	0	0	2234498	2234584	1	87	2e-38	161
srn_1520_Sau76	90.00	120	11	1	618732	618850	3	122	3e-36	154
srn_4610_sRNA377	95.60	91	4	0	2548592	2548682	95	5	4e-34	147
srn_3020_Teg65	98.78	82	1	0	1446226	1446307	1	82	4e-34	147
srn_2830_SbrB	88.89	117	13	0	1317084	1317200	1	117	2e-33	145
srn_5000_Sau13	91.09	101	9	0	2657543	2657643	1	101	3e-31	137
srn_0870_Teg38as	96.34	82	3	0	391270	391351	1	82	1e-30	135
srn_2610_Sau24	100.00	71	0	0	1203610	1203680	1	71	1e-29	132
srn_4680_Sau19	96.00	75	3	0	2493201	2493275	1	75	8e-27	122
srn_1550_Teg49	83.21	131	20	2	648010	648139	7	136	1e-25	119
srn_4540_sprAs2	100.00	62	0	0	2441023	2441084	1	62	1e-24	115
srn_4260_Sau30	96.88	64	2	0	2239187	2239250	1	64	2e-22	108
srn_3590_sprAs1	100.00	57	0	0	1827419	1827475	1	57	8e-22	106
srn_4840_RsaOV	100.00	54	0	0	2578641	2578694	1	54	4e-20	100
srn_1020_sRNA90	100.00	52	0	0	435709	435760	1	52	5e-19	97.1
srn_0060_Sau65	96.55	58	2	0	21667	21724	1	58	5e-19	97.1
srn_3770_Teg122	100.00	49	0	0	1965577	1965625	4	52	2e-17	91.6
srn_1570_RsaOW2	93.55	62	3	1	1769421	1769481	4	65	2e-17	91.6
srn_1460_sRNA128	100.00	47	0	0	570270	570316	1	47	3e-16	87.9
srn_9490_sRNA337	92.98	57	3	1	1769424	1769479	57	1	1e-14	82.4
srn_3700_Teg142	92.98	57	3	1	1769424	1769479	57	1	1e-14	82.4
srn_3210_sRNA254	91.07	56	5	0	418018	418073	101	156	6e-13	76.8
srn_3850_Teg123	90.38	52	5	0	2005111	2005162	13	64	1e-10	69.4
srn_0590_sRNA37	90.57	53	3	2	258843	258894	1	52	1e-10	69.4