Staphylococcus epidermidis ATCC 12228

The prediction was done using a set of srn genes identified from SRD curated sRNAs.

Numbers of SRD’S predicted srn sequences =

subject_seq_id	identity	length	mismatch	gapopen	query_start	query_end	subject_start	subject_end	evalue	bitscore
srn_0230_rsaOX	97.49	478	12	0	97436	97913	478	1	0.0	817
srn_0230_rsaOX	97.28	478	13	0	149562	150039	1	478	0.0	811
tmRNA	90.28	360	32	3	564585	564942	1	359	2e-130	468
4.5S	94.31	246	14	0	2386598	2386843	246	1	4e-103	377
srn_3910_RNAIII	81.61	484	55	24	1689060	1689537	1	456	7e-101	370
srn_1480_sRNA130	87.00	323	42	0	334630	334952	284	606	3e-99	364
srn_1480_sRNA130	86.20	326	45	0	334717	335042	281	606	7e-96	353
RNAseP	89.05	283	24	7	1173058	1173338	158	435	4e-93	344
srn_3960_sRNA323	98.37	184	3	0	1598995	1599178	1	184	5e-87	324
srn_3960_sRNA323	98.37	184	3	0	1812590	1812773	1	184	5e-87	324
srn_3960_sRNA323	98.37	184	3	0	2336925	2337108	1	184	5e-87	324
srn_3960_sRNA323	97.83	184	4	0	1723277	1723460	1	184	2e-85	318
srn_3960_sRNA323	96.74	184	6	0	2381562	2381745	1	184	5e-82	307
srn_3580_SprA1	91.04	212	13	4	2256312	2256522	1	207	3e-74	281
srn_4830_Sau6072	86.67	225	28	2	2151094	2151317	17	240	3e-64	248
srn_2130_rsaE	89.50	200	15	5	684148	684344	5	201	3e-64	248
srn_0070_sRNA4	87.44	215	27	0	24952	25166	1	215	3e-64	248
srn_0860_RsaOB	88.24	204	21	2	2452586	2452789	391	191	5e-62	241
srn_3510_Teg74	89.30	187	13	5	1493959	1494142	118	300	4e-58	228
srn_0120_Teg6as	100.00	120	0	0	89111	89230	287	406	2e-56	222
srn_0120_Teg6as	98.40	125	1	1	80617	80740	282	406	3e-55	219
srn_0120_Teg6as	99.17	120	0	1	71011	71129	406	287	3e-54	215
srn_9380_sRNA298	99.19	123	0	1	80616	80737	11	133	7e-56	220
srn_9380_sRNA298	100.00	116	0	0	71014	71129	133	18	3e-54	215
srn_9380_sRNA298	99.15	117	0	1	89111	89227	18	133	2e-52	209
srn_3040_Sau50	94.41	143	8	0	1198508	1198650	3	145	7e-56	220
srn_1640_rsaD	92.11	152	11	1	414442	414592	26	177	1e-53	213
srn_3550_Teg75	94.33	141	3	5	1508483	1508620	7	145	4e-53	211
srn_1940_sRNA165	84.16	221	30	4	561404	561622	9	226	2e-52	209
srn_1140_Sau82	93.01	143	10	0	2383406	2383548	143	1	2e-52	209
srn_1410_Teg77	91.45	152	10	3	299598	299749	1	149	2e-51	206
srn_0030_Teg35	83.55	231	27	9	11358	11582	1	226	2e-51	206
srn_3050_sRNA242	88.89	162	18	0	1202483	1202644	1	162	9e-50	200
srn_2950_Teg6	85.23	176	22	4	1086258	1086433	1	172	4e-43	178
srn_3310_sRNA263	87.18	156	16	4	1384868	1385020	6	160	6e-42	174
srn_9570_sRNA305	82.33	215	23	13	694410	694611	213	1	2e-41	172
srn_1390_sRNA123	81.12	233	29	12	296937	297165	1	222	2e-41	172
srn_1270_Teg44	95.37	108	5	0	2347133	2347240	225	118	2e-41	172
srn_4160_Sau25	86.42	162	13	6	1813158	1813316	1	156	3e-40	169
srn_4160_Sau25	92.31	117	5	3	2337492	2337606	1	115	1e-38	163
srn_4160_Sau25	93.40	106	4	2	2382129	2382232	1	105	7e-36	154
srn_4160_Sau25	92.59	108	5	2	1599563	1599668	1	107	3e-35	152
srn_4160_Sau25	93.33	105	4	2	1723844	1723946	1	104	3e-35	152
srn_4390_rsaOG	93.75	112	6	1	1922140	1922251	1	111	9e-40	167
srn_2030_Teg52	93.58	109	6	1	588093	588200	6	114	4e-38	161
srn_3650_sRNA289	91.45	117	9	1	1578256	1578372	3	118	2e-37	159
srn_1250_sRNA110	83.66	153	22	3	2349557	2349709	181	32	6e-32	141
srn_4140_sRNA338	100.00	68	0	0	1595831	1595898	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	1720300	1720367	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	1809618	1809685	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	2333856	2333923	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	2378587	2378654	1	68	2e-27	126
srn_1420_Sau60	92.13	89	6	1	301497	301584	1	89	6e-27	124
srn_4270_sRNA347	91.30	92	2	4	1853284	1853370	1	91	7e-26	121
srn_3150_Teg83	88.89	99	7	3	1258783	1258877	5	103	3e-25	119
srn_3080_Teg66	82.86	140	15	6	1211369	1211504	1	135	9e-25	117
srn_4240_Teg84	93.51	77	3	2	1849741	1849816	1	76	1e-23	113
srn_2150_sRNA185	86.27	102	14	0	689755	689856	4	105	4e-23	111
srn_0890_sRNA71	90.36	83	8	0	2444791	2444873	87	5	2e-22	110
srn_1320_sRNA117	100.00	58	0	0	2379808	2379865	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	2335077	2335134	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	1810839	1810896	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	1721521	1721578	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	1597052	1597109	58	1	6e-22	108
srn_9470_sRNA322	100.00	55	0	0	1597048	1597102	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	1721517	1721571	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	1810835	1810889	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	2335073	2335127	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	2379804	2379858	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	2379813	2379867	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	2335082	2335136	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	1810844	1810898	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	1721526	1721580	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	1597057	1597111	55	1	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	1597050	1597104	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	1721519	1721573	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	1810837	1810891	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	2335075	2335129	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	2379806	2379860	1	55	3e-20	102
srn_2320_sRNA195	90.12	81	4	3	680256	680335	154	77	3e-20	102
srn_2320_sRNA195	92.54	67	3	2	2329109	2329174	154	89	4e-18	95.3
srn_2320_sRNA195	91.18	68	4	2	613316	613382	88	154	6e-17	91.6
srn_2320_sRNA195	90.14	71	3	4	1501487	1501556	87	154	2e-16	89.8
srn_2320_sRNA195	92.19	64	3	2	656179	656241	92	154	2e-16	89.8
srn_2320_sRNA195	92.19	64	3	2	666077	666139	92	154	2e-16	89.8
srn_2320_sRNA195	92.19	64	3	2	1505106	1505168	154	92	2e-16	89.8
srn_2320_sRNA195	90.00	70	3	4	2125452	2125518	154	86	7e-16	87.9
srn_2320_sRNA195	92.06	63	3	2	279583	279644	93	154	7e-16	87.9
srn_2320_sRNA195	92.06	63	3	2	1938092	1938153	154	93	7e-16	87.9
srn_2320_sRNA195	92.19	64	2	3	486821	486883	154	93	7e-16	87.9
srn_2320_sRNA195	93.22	59	2	2	105469	105526	149	92	3e-15	86.1
srn_2320_sRNA195	91.94	62	3	2	2021413	2021473	154	94	3e-15	86.1
srn_2320_sRNA195	91.94	62	3	2	1774142	1774202	154	94	3e-15	86.1
srn_2320_sRNA195	91.94	62	3	2	57003	57063	154	94	3e-15	86.1
srn_3450_Sau84	90.00	70	7	0	1453329	1453398	19	88	6e-17	91.6
srn_1460_sRNA128	100.00	47	0	0	313647	313693	1	47	7e-16	87.9
srn_0170_Teg9as	100.00	46	0	0	80698	80743	1	46	3e-15	86.1
srn_0170_Teg9as	100.00	46	0	0	89188	89233	1	46	3e-15	86.1
srn_0170_Teg9as	100.00	46	0	0	71008	71053	46	1	3e-15	86.1
srn_3190_Teg68	81.31	107	15	5	1329337	1329440	71	175	3e-14	82.4
srn_3770_Teg122	95.92	49	1	1	1679971	1680018	4	52	4e-13	78.7
srn_0940_Sau6356	89.83	59	6	0	2427914	2427972	59	1	2e-12	76.8
srn_1450_Sau6057	100.00	38	0	0	312962	312999	20	57	7e-11	71.3