Staphylococcus pseudintermedius ED99

The prediction was done using a set of srn genes identified from SRD curated sRNAs.

Numbers of SRD’S predicted srn sequences =

subject_seq_id	identity	length	mismatch	gapopen	query_start	query_end	subject_start	subject_end	evalue	bitscore
srn_9180_sRNA82	98.33	480	1	1	2485987	2486459	480	1	0.0	835
srn_9140_sRNA78	100.00	432	0	0	2505840	2506271	432	1	0.0	798
srn_9130_sRNA77	100.00	298	0	0	2507627	2507924	298	1	2e-155	551
tmRNA	88.30	359	40	2	2006451	2006807	359	1	1e-118	429
srn_9170_sRNA81	100.00	184	0	0	2489385	2489568	184	1	5e-92	340
srn_3960_sRNA323	97.83	184	4	0	958117	958300	184	1	2e-85	318
srn_3960_sRNA323	97.83	184	4	0	816308	816491	184	1	2e-85	318
srn_3960_sRNA323	97.83	184	4	0	712015	712198	184	1	2e-85	318
srn_3960_sRNA323	97.83	184	4	0	2346348	2346531	1	184	2e-85	318
srn_3960_sRNA323	97.83	184	4	0	2392461	2392644	1	184	2e-85	318
4.5S	90.99	233	21	0	2397016	2397248	234	2	3e-84	315
6S	87.61	218	18	9	1198848	1199061	218	6	4e-63	244
RNAseP	85.25	244	24	10	1370782	1371017	435	196	6e-62	241
srn_9160_sRNA80	99.23	130	1	0	2491869	2491998	130	1	3e-60	235
srn_3040_Sau50	91.16	147	13	0	1345398	1345544	147	1	9e-50	200
srn_9120_sRNA76	100.00	103	0	0	2509962	2510064	103	1	6e-47	191
srn_3550_Teg75	89.80	147	6	7	1034309	1034450	145	3	1e-43	180
srn_3080_Teg66	89.93	139	9	5	1332744	1332882	135	2	6e-42	174
srn_3510_Teg74	90.30	134	8	4	1332732	1332865	264	136	7e-41	171
srn_3510_Teg74	87.33	150	9	9	1044815	1044957	277	131	1e-38	163
srn_2130_rsaE	92.17	115	7	1	1899907	1900019	202	88	4e-38	161
srn_3050_sRNA242	84.35	147	23	0	1341263	1341409	158	12	4e-33	145
srn_0230_rsaOX	87.60	121	13	2	544860	544979	120	1	2e-31	139
srn_2030_Teg52	88.79	116	7	3	1992458	1992573	114	5	7e-31	137
srn_4140_sRNA338	100.00	68	0	0	961512	961579	68	1	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	819528	819595	68	1	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	715235	715302	68	1	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	2343242	2343309	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	2389355	2389422	1	68	2e-27	126
srn_9150_sRNA79	100.00	58	0	0	2505443	2505500	58	1	6e-22	108
srn_4240_Teg84	92.11	76	6	0	663366	663441	76	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	2390576	2390633	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	2344463	2344520	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	714024	714081	1	58	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	818317	818374	1	58	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	960301	960358	1	58	6e-22	108
srn_9470_sRNA322	100.00	55	0	0	960308	960362	55	1	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	818324	818378	55	1	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	714031	714085	55	1	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	2344459	2344513	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	2390572	2390626	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	2390581	2390635	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	2344468	2344522	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	714022	714076	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	818315	818369	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	960299	960353	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	960306	960360	55	1	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	818322	818376	55	1	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	714029	714083	55	1	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	2344461	2344515	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	2390574	2390628	1	55	3e-20	102
srn_0930_Teg76	98.28	58	1	0	2516607	2516664	61	4	3e-20	102
srn_5120_Sau5995	87.36	87	9	2	1951884	1951970	7	91	4e-19	99.0
srn_4220_sRNA345	95.08	61	3	0	666839	666899	87	27	1e-18	97.1
srn_4220_sRNA345	95.08	61	3	0	664304	664364	87	27	1e-18	97.1
srn_4160_Sau25	100.00	46	0	0	815807	815852	105	60	3e-15	86.1
srn_4160_Sau25	100.00	46	0	0	2346987	2347032	60	105	3e-15	86.1
srn_4160_Sau25	100.00	45	0	0	2393100	2393144	60	104	1e-14	84.2
srn_4160_Sau25	100.00	44	0	0	711516	711559	103	60	4e-14	82.4
srn_4160_Sau25	100.00	43	0	0	957619	957661	102	60	1e-13	80.5
srn_4270_sRNA347	83.87	93	8	3	659594	659681	91	1	4e-14	82.4
srn_2880_RsaOQ	87.67	73	4	5	395106	395176	131	200	1e-13	80.5