Staphylococcus aureus subsp aureus str COL

The prediction was done using a set of srn genes identified from SRD RNA-seq analysis.

Numbers of SRD’S predicted srn sequences =

subject_seq_id	identity	length	mismatch	gapopen	query_start	query_end	subject_start	subject_end	evalue	bitscore
srn_4470_RsaX28	99.92	1177	1	0	2436295	2437471	1	1177	0.0	2169
srn_1670_Teg20as	99.60	1009	4	0	747679	748687	1	1009	0.0	1842
srn_0770_Teg18as	99.19	865	7	0	349231	350095	1	865	0.0	1559
srn_1580_sbrC	99.26	808	6	0	711848	712655	120	927	0.0	1459
srn_5020_sRNA401	99.65	568	2	0	2714470	2715037	1	568	0.0	1038
srn_1590_rsaC	99.82	544	1	0	712018	712561	1	544	0.0	1000
srn_3910_RNAIII	100.00	516	0	0	2082422	2082937	1	516	0.0	953
srn_2130_rsaE	99.35	459	3	0	1014891	1015349	1	459	0.0	832
srn_4330_Teg36as	99.12	452	4	0	2351401	2351852	1	452	0.0	813
RNaseP	100.00	435	0	0	1525139	1525573	1	435	0.0	804
srn_0860_RsaOB	99.76	421	1	0	438319	438739	1	421	0.0	773
srn_5070_RsaX25	99.74	379	1	0	2762217	2762595	1	379	0.0	695
srn_2250_sprG4	99.73	369	1	0	1046044	1046412	1	369	0.0	676
srn_2880_RsaOQ	99.73	366	1	0	1413781	1414146	1	366	0.0	671
tmRNA	98.89	359	4	0	875955	876313	1	359	0.0	641
srn_3300_Teg70	99.71	348	1	0	1742260	1742607	1	348	0.0	638
srn_0280_sRNA16	97.58	372	9	0	107407	107778	1	372	0.0	638
srn_4050_artR	99.71	346	1	0	2188215	2188560	1	346	0.0	634
srn_2560_sRNA212	99.37	319	0	2	1217048	1217365	1	318	1e-163	577
srn_4340_Teg23	100.00	307	0	0	2352230	2352536	1	307	8e-161	568
srn_4770_sRNA385	95.75	353	10	1	2601696	2602048	85	432	1e-159	564
srn_4770_sRNA385	91.36	81	7	0	2601323	2601403	1	81	2e-23	111
srn_9500_sRNA368	100.00	302	0	0	2476107	2476408	1	302	5e-158	558
srn_2530_sRNA209	99.67	304	1	0	1191474	1191777	1	304	2e-157	556
srn_1990_Teg40as	100.00	300	0	0	891577	891876	1	300	6e-157	555
srn_1350_Teg45	99.66	291	1	0	597530	597820	1	291	3e-150	532
srn_4830_Sau6072	98.98	295	3	0	2615432	2615726	1	295	4e-149	529
srn_3360_sRNA267	100.00	283	0	0	1788171	1788453	1	283	2e-147	523
srn_3320_sRNA264	100.00	283	0	0	1759401	1759683	1	283	2e-147	523
srn_3260_Teg69	99.63	273	1	0	1716444	1716716	1	273	3e-140	499
srn_4190_sRNA342	100.00	259	0	0	2256274	2256532	1	259	4e-134	479
srn_4520_RsaX20	99.24	262	2	0	2473807	2474068	1	262	2e-132	473
srn_4000_sRNA326	100.00	253	0	0	2174837	2175089	1	253	9e-131	468
srn_3280_sRNA260	99.23	259	2	0	1735993	1736251	1	259	9e-131	468
4.5S	100.00	253	0	0	524426	524678	1	253	9e-131	468
srn_3570_sRNA284	96.75	277	9	0	1906176	1906452	1	277	4e-129	462
srn_3570_sRNA284	98.59	71	1	0	1906044	1906114	1	71	6e-28	126
srn_3570_sRNA284	94.87	78	4	0	1906511	1906588	270	347	8e-27	122
srn_4100_sprG3	99.22	256	1	1	2201282	2201537	1	255	1e-128	460
srn_3350_sRNA266	100.00	246	0	0	1774399	1774644	1	246	7e-127	455
srn_0260_Teg15as	100.00	244	0	0	94779	95022	1	244	9e-126	451
srn_2970_sRNA235	100.00	240	0	0	1459891	1460130	1	240	1e-123	444
srn_2230_sprG2	99.17	242	1	1	1045786	1046027	1	241	9e-121	435
srn_2450_Sau6229	99.16	239	2	0	1168083	1168321	1	239	1e-119	431
srn_0030_Teg35	100.00	226	0	0	12519	12744	1	226	9e-116	418
srn_3950_Teg16	100.00	225	0	0	2100762	2100986	1	225	3e-115	416
srn_4980_Teg32	100.00	224	0	0	2702470	2702693	1	224	1e-114	414
srn_4550_sprA2	98.71	233	3	0	2491894	2492126	1	233	1e-114	414
srn_0930_Teg76	100.00	223	0	0	460088	460310	1	223	4e-114	412
srn_3490_RsaOE	100.00	220	0	0	1865234	1865453	1	220	2e-112	407
6S	100.00	218	0	0	1712980	1713197	1	218	2e-111	403
srn_1490_Sau6477	100.00	216	0	0	654321	654536	1	216	3e-110	399
srn_2520_Teg60	99.54	216	1	0	1189668	1189883	1	216	1e-108	394
srn_0440_rsaK	100.00	212	0	0	202681	202892	1	212	5e-108	392
srn_4300_sRNA349	92.80	264	18	1	2324862	2325124	1	264	1e-104	381
srn_4300_sRNA349	88.34	163	14	4	2019574	2019735	106	264	2e-47	191
srn_4300_sRNA349	85.37	164	18	4	1390470	1390633	262	105	1e-39	165
srn_4300_sRNA349	84.05	163	20	5	1478898	1479060	106	262	1e-35	152
srn_1810_Teg51	100.00	206	0	0	814957	815162	1	206	1e-104	381
srn_1080_RsaX05	100.00	205	0	0	493548	493752	1	205	4e-104	379
srn_0050_Teg1	96.51	229	8	0	15833	16061	1	229	4e-104	379
srn_3660_Sau6515	98.59	213	3	0	1961561	1961773	1	213	1e-103	377
srn_3580_SprA1	99.52	208	0	1	1906889	1907096	1	207	1e-103	377
srn_1210_sRNA106	99.51	205	1	0	546644	546848	1	205	2e-102	374
srn_4110_sRNA335	100.00	198	0	0	2204975	2205172	1	198	3e-100	366
srn_5010_Teg33	99.49	196	1	0	2709186	2709381	1	196	2e-97	357
srn_3390_Teg7	100.00	193	0	0	1819994	1820186	1	193	2e-97	357
srn_3190_Teg68	99.49	195	1	0	1701998	1702192	1	195	7e-97	355
srn_4740_sprA3	93.97	232	12	2	2589875	2590106	1	230	3e-95	350
srn_1640_rsaD	100.00	177	0	0	728111	728287	1	177	2e-88	327
srn_2410_Sau6524	100.00	173	0	0	1143821	1143993	1	173	3e-86	320
srn_4090_sprF3	98.84	173	1	1	2201211	2201383	1	172	2e-82	307
srn_2950_Teg6	98.84	172	2	0	1440346	1440517	1	172	2e-82	307
srn_9480_sRNA334	100.00	163	0	0	2203982	2204144	1	163	9e-81	302
srn_3050_sRNA242	100.00	163	0	0	1556278	1556440	1	163	9e-81	302
srn_2460_Teg58	99.39	163	1	0	1174604	1174766	1	163	4e-79	296
srn_1550_Teg49	99.39	163	1	0	700581	700743	1	163	4e-79	296
srn_2550_Teg80	100.00	159	0	0	1210681	1210839	1	159	2e-78	294
srn_9340_sRNA287	100.00	156	0	0	1939404	1939559	1	156	7e-77	289
srn_1070_Sau41	100.00	156	0	0	492844	492999	1	156	7e-77	289
srn_4460_Teg26	97.59	166	4	0	2426694	2426859	1	166	9e-76	285
srn_4160_Sau25	97.60	167	3	1	2233710	2233875	1	167	9e-76	285
srn_4160_Sau25	100.00	105	0	0	577881	577985	105	1	2e-48	195
srn_4160_Sau25	100.00	105	0	0	529039	529143	105	1	2e-48	195
srn_4160_Sau25	98.20	111	1	1	2117220	2117329	1	111	6e-48	193
srn_4160_Sau25	100.00	104	0	0	572670	572773	104	1	6e-48	193
srn_4160_Sau25	99.02	102	0	1	1982081	1982181	1	102	1e-44	182
srn_2330_Sau11	100.00	153	0	0	1097229	1097381	1	153	3e-75	283
srn_2500_sRNA207	87.50	248	23	6	1182249	1182492	80	323	4e-74	279
srn_2500_sRNA207	91.07	168	14	1	418811	418978	79	245	6e-58	226
srn_2500_sRNA207	93.80	129	7	1	1850466	1850594	80	207	6e-48	193
srn_2500_sRNA207	84.21	190	23	5	1671647	1671829	190	1	2e-43	178
srn_2500_sRNA207	89.86	138	11	2	418914	419048	124	261	2e-42	174
srn_2500_sRNA207	89.29	140	12	3	2601563	2601699	140	1	8e-42	172
srn_2500_sRNA207	81.88	160	23	5	2766863	2767020	294	139	5e-29	130
srn_4120_Teg20	100.00	149	0	0	2208418	2208566	1	149	6e-73	276
srn_3780_Teg13	100.00	148	0	0	2059374	2059521	1	148	2e-72	274
srn_3040_Sau50	100.00	148	0	0	1552304	1552451	1	148	2e-72	274
srn_2290_sbrA	100.00	148	0	0	1054208	1054355	1	148	2e-72	274
srn_2660_sRNA219	99.33	149	0	1	1305587	1305735	1	148	9e-71	268
srn_2580_Teg103	100.00	145	0	0	1227589	1227733	1	145	9e-71	268
srn_2200_Sau6053	100.00	145	0	0	1035464	1035608	1	145	9e-71	268
srn_3210_sRNA254	97.44	156	4	0	1705511	1705666	1	156	3e-70	267
srn_4670_RsaOT	99.32	146	1	0	2544978	2545123	1	146	1e-69	265
srn_1510_rsaA	100.00	143	0	0	664519	664661	1	143	1e-69	265
srn_3610_SprC	100.00	142	0	0	1937114	1937255	1	142	4e-69	263
srn_3550_Teg75	99.31	145	0	1	1892831	1892974	1	145	2e-68	261
srn_0590_sRNA37	100.00	140	0	0	265138	265277	1	140	6e-68	259
srn_0510_rsaG	100.00	137	0	0	235662	235798	1	137	3e-66	254
srn_3140_Teg151	99.26	136	1	0	1593339	1593474	1	136	4e-64	246
srn_3740_Sau6492	100.00	131	0	0	2032576	2032706	1	131	6e-63	243
srn_1930.5_rsaOF	100.00	130	0	0	2008756	2008885	1	130	2e-62	241
srn_1930.5_rsaOF	90.29	103	7	3	1178322	1178424	130	31	1e-29	132
srn_1930.5_rsaOF	87.25	102	7	3	809640	809740	127	31	2e-23	111
srn_4590_Teg28	100.00	128	0	0	2513685	2513812	1	128	3e-61	237
srn_2340_Sau59	100.00	128	0	0	1098896	1099023	1	128	3e-61	237
srn_1910_rsaH	100.00	128	0	0	861833	861960	1	128	3e-61	237
srn_1520_Sau76	100.00	122	0	0	664679	664800	1	122	6e-58	226
srn_4420_Teg25	100.00	121	0	0	2380888	2381008	1	121	2e-57	224
srn_1760_sRNA149	98.43	127	2	0	793569	793695	1	127	2e-57	224
srn_3820_SprX	94.00	150	4	2	397724	397872	146	1	7e-57	222
srn_3860_sRNA315	99.18	122	1	0	357166	357287	122	1	3e-56	220
srn_2830_SbrB	100.00	118	0	0	1378476	1378593	1	118	1e-55	219
srn_2240_sprF2	100.00	116	0	0	1045970	1046085	1	116	1e-54	215
srn_4390_rsaOG	100.00	111	0	0	2366675	2366785	1	111	7e-52	206
srn_3870_sRNA296	94.07	135	8	0	2010266	2010400	49	183	7e-52	206
srn_3870_sRNA296	82.70	185	27	4	1390395	1390576	183	1	6e-38	159
srn_3870_sRNA296	82.16	185	28	4	1478954	1479135	1	183	3e-36	154
srn_3870_sRNA296	91.67	108	8	1	899240	899346	1	108	1e-34	148
srn_3870_sRNA296	91.67	108	8	1	149255	149361	108	1	1e-34	148
srn_3870_sRNA296	91.43	105	9	0	1107674	1107778	4	108	2e-33	145
srn_3870_sRNA296	82.25	169	22	5	1178110	1178272	167	1	8e-32	139
srn_3600_SprB	98.29	117	1	1	1923141	1923257	1	116	3e-51	204
srn_4440_sRNA361	100.00	109	0	0	2414294	2414402	1	109	1e-50	202
srn_2540_sRNA210	100.00	106	0	0	1191983	1192088	1	106	4e-49	196
srn_2400_Teg37as	99.08	109	1	0	1141894	1142002	1	109	4e-49	196
srn_3460_Sau5949	99.07	107	0	1	1845622	1845728	1	106	2e-47	191
srn_3460_Sau5949	100.00	45	0	0	1693780	1693824	106	62	4e-15	84.2
srn_5000_Sau13	98.08	104	2	0	2708535	2708638	1	104	1e-44	182
srn_0880_Sau5971	100.00	96	0	0	443968	444063	1	96	2e-43	178
srn_4610_sRNA377	100.00	95	0	0	1107779	1107873	95	1	6e-43	176
srn_4610_sRNA377	100.00	95	0	0	808705	808799	95	1	6e-43	176
srn_4610_sRNA377	97.89	95	2	0	2010385	2010479	95	1	1e-39	165
srn_4610_sRNA377	97.89	95	2	0	899347	899441	95	1	1e-39	165
srn_4610_sRNA377	97.87	94	2	0	2803341	2803434	95	2	5e-39	163
srn_4610_sRNA377	96.84	95	3	0	692460	692554	1	95	6e-38	159
srn_4610_sRNA377	96.84	95	3	0	1479120	1479214	95	1	6e-38	159
srn_4610_sRNA377	96.84	95	3	0	1390316	1390410	1	95	6e-38	159
srn_4610_sRNA377	96.84	95	3	0	2516791	2516885	1	95	6e-38	159
srn_4610_sRNA377	95.79	95	4	0	1081757	1081851	95	1	3e-36	154
srn_4610_sRNA377	96.15	78	3	0	2601623	2601700	82	5	2e-28	128
srn_4610_sRNA377	90.22	92	8	1	2019791	2019882	93	3	1e-25	119
srn_4610_sRNA377	94.37	71	4	0	1850856	1850926	25	95	6e-23	110
srn_2740_Teg108	98.98	98	1	0	1351807	1351904	1	98	6e-43	176
srn_1770_rsaOC	97.98	99	2	0	793590	793688	1	99	8e-42	172
srn_0950_Sau63	100.00	91	0	0	466227	466317	1	91	1e-40	169
srn_4570_Teg27	98.90	91	1	0	2497051	2497141	1	91	5e-39	163
srn_4220_sRNA345	100.00	87	0	0	2288647	2288733	1	87	2e-38	161
srn_4220_sRNA345	93.33	90	3	2	2283009	2283098	1	87	5e-29	130
srn_1900_Sau15	97.83	92	2	0	861173	861264	1	92	6e-38	159
srn_3020_Teg65	100.00	82	0	0	1525342	1525423	1	82	1e-35	152
srn_0870_Teg38as	100.00	82	0	0	441974	442055	1	82	1e-35	152
srn_4290_sRNA348	100.00	79	0	0	2321416	2321494	1	79	5e-34	147
srn_4060_Sau6723	100.00	79	0	0	2189376	2189454	1	79	5e-34	147
srn_3110_Sau6353	100.00	76	0	0	1580753	1580828	1	76	2e-32	141
srn_1780_Sau66	98.73	79	1	0	796290	796368	1	79	2e-32	141
srn_4680_Sau19	100.00	75	0	0	2545546	2545620	1	75	8e-32	139
srn_2610_Sau24	98.59	71	1	0	1265225	1265295	1	71	6e-28	126
srn_3710_Sau6799	98.53	68	1	0	1992796	1992863	1	68	3e-26	121
srn_1930.2_rsaOF	98.53	68	1	0	2325126	2325193	68	1	3e-26	121
srn_1930.2_rsaOF	97.06	68	1	1	2325012	2325078	68	1	5e-24	113
srn_1930.2_rsaOF	91.30	69	4	1	2019619	2019687	67	1	6e-18	93.5
srn_1570_RsaOW2	100.00	65	0	0	2226490	2226554	65	1	3e-26	121
srn_1570_RsaOW2	100.00	65	0	0	1972931	1972995	65	1	3e-26	121
srn_1570_RsaOW2	100.00	65	0	0	1932860	1932924	65	1	3e-26	121
srn_4540_sprAs2	100.00	62	0	0	2491867	2491928	1	62	1e-24	115
srn_4540_sprAs2	96.77	62	2	0	2487666	2487727	1	62	3e-21	104
srn_4260_Sau30	98.44	64	1	0	2293382	2293445	1	64	5e-24	113
srn_0060_Sau65	100.00	58	0	0	21750	21807	1	58	2e-22	108
srn_9490_sRNA337	100.00	57	0	0	1932862	1932918	1	57	8e-22	106
srn_9490_sRNA337	100.00	57	0	0	1972933	1972989	1	57	8e-22	106
srn_9490_sRNA337	100.00	57	0	0	2226492	2226548	1	57	8e-22	106
srn_3700_Teg142	100.00	57	0	0	1932862	1932918	1	57	8e-22	106
srn_3700_Teg142	100.00	57	0	0	1972933	1972989	1	57	8e-22	106
srn_3700_Teg142	100.00	57	0	0	2226492	2226548	1	57	8e-22	106
srn_3590_sprAs1	100.00	57	0	0	1907061	1907117	1	57	8e-22	106
srn_4840_RsaOV	100.00	55	0	0	2633013	2633067	1	55	1e-20	102
srn_1930.1_rsaOF	98.28	58	1	0	863220	863277	1	58	1e-20	102
srn_1930.1_rsaOF	91.67	60	3	1	863278	863337	1	58	1e-14	82.4
srn_4170_Sau23	100.00	54	0	0	2252249	2252302	1	54	4e-20	100
srn_0960_Teg147	98.21	56	1	0	468361	468416	1	56	1e-19	99.0
srn_4530_sprAs2prime	98.18	55	1	0	2487670	2487724	1	55	5e-19	97.1
srn_3770_Teg122	100.00	52	0	0	2059298	2059349	1	52	5e-19	97.1
srn_1020_sRNA90	100.00	52	0	0	482583	482634	1	52	5e-19	97.1
srn_1060_Teg149	100.00	51	0	0	492379	492429	1	51	2e-18	95.3
srn_1460_sRNA128	100.00	47	0	0	618768	618814	1	47	3e-16	87.9