Staphylococcus aureus subsp aureus str USA300 TCH1516

The prediction was done using a set of srn genes identified from SRD RNA-seq analysis.
Numbers of SRD’S predicted srn sequences =
subject_seq_id identity length mismatch gapopen query_start query_end subject_start subject_end evalue bitscore
srn_4470_RsaX2899.8311772025000122501188111770.0 2163
srn_1670_Teg20as99.70100930740108741116110090.0 1847
srn_0770_Teg18as99.198657036878136964518650.0 1559
srn_1580_sbrC99.26808607042777050841209270.0 1459
srn_5020_sRNA40199.65568202777878277844515680.0 1038
srn_1590_rsaC99.825441070444770499015440.0 1000
srn_3790_sRNA30199.62532202085606208613715320.0 972
srn_3910_RNAIII100.00516002146863214737815160.0 953
srn_2130_rsaE99.35459301005365100582314590.0 832
srn_4330_Teg36as99.12452402415418241586914520.0 813
RNaseP100.00435001515799151623314350.0 804
srn_0860_RsaOB99.764211041429341471314210.0 773
srn_5070_RsaX2599.74379102825654282603213790.0 695
srn_2250_sprG499.73369101036517103688513690.0 676
srn_2880_RsaOQ99.73366101403925140429013660.0 671
srn_0280_sRNA1698.123727012815212852313720.0 649
tmRNA98.893594086840886876613590.0 641
srn_3300_Teg7099.71348101765687176603413480.0 638
srn_4050_artR99.71346102252411225275613460.0 634
srn_2560_sRNA21299.37319021207175120749213181e-163 577
srn_4340_Teg23100.00307002416247241655313078e-161 568
srn_3840_sprG199.68309102090854209116213093e-160 566
srn_4770_sRNA38595.7535310126651482665500854321e-159 564
srn_4770_sRNA38591.368170266477526648551812e-23 111
srn_9500_sRNA368100.00302002539820254012113025e-158 558
srn_2530_sRNA20999.67304101181602118190513042e-157 556
srn_1990_Teg40as100.003000088403088432913007e-157 555
srn_4830_Sau607298.98295302678883267917712954e-149 529
srn_3360_sRNA267100.00283001811598181188012832e-147 523
srn_3320_sRNA264100.00283001782828178311012832e-147 523
srn_1350_Teg4598.972913057663957692912917e-147 521
srn_3260_Teg6999.63273101739871174014312733e-140 499
srn_4190_sRNA342100.00259002320291232054912594e-134 479
srn_4520_RsaX2099.24262202537519253778012622e-132 473
srn_4000_sRNA326100.00253002239033223928512539e-131 468
srn_3280_sRNA26099.23259201759420175967812599e-131 468
4.5S100.002530050806550831712539e-131 468
srn_3570_sRNA28496.75277901929105192938112774e-129 462
srn_3570_sRNA28494.877840192944019295172703478e-27 122
srn_4100_sprG399.22256112265544226579912551e-128 460
srn_3350_sRNA266100.00246001797826179807112467e-127 455
srn_0260_Teg15as100.002440011552411576712449e-126 451
srn_2970_sRNA235100.00240001450041145028012401e-123 444
srn_2230_sprG299.59241101036260103650012412e-122 440
srn_2450_Sau622999.16239201158492115873012391e-119 431
srn_0030_Teg35100.0022600125191274412269e-116 418
srn_3950_Teg16100.00225002165203216542712253e-115 416
srn_4980_Teg32100.00224002765920276614312241e-114 414
srn_4550_sprA298.71233302555606255583812331e-114 414
srn_0930_Teg76100.002230043606343628512234e-114 412
srn_3490_RsaOE100.00220001888295188851412202e-112 407
6S100.00218001736407173662412183e-111 403
srn_1490_Sau6477100.002160063339563361012163e-110 399
srn_0440_rsaK100.002120022333322354412125e-108 392
srn_2520_Teg6099.07216201179796118001112167e-107 388
srn_3580_SprA1100.00207001929818193002412073e-105 383
srn_4300_sRNA34992.802641812388879238914112641e-104 381
srn_4300_sRNA349100.0011400238914323892561512642e-53 211
srn_4300_sRNA34988.34163144204097620411371062642e-47 191
srn_4300_sRNA34985.37164184138061413807772621051e-39 165
srn_4300_sRNA34984.05163205146978914699511062621e-35 152
srn_4300_sRNA34983.03165224283029928304621052642e-33 145
srn_4300_sRNA34987.61113131116852011686322631525e-29 130
srn_1810_Teg51100.002060080718680739112061e-104 381
srn_1080_RsaX05100.002050047718747739112054e-104 379
srn_0050_Teg196.5122980158331606112294e-104 379
srn_3660_Sau651598.59213301982956198316812132e-103 377
srn_1210_sRNA10699.512051053028253048612052e-102 374
srn_4110_sRNA335100.00198002269237226943411983e-100 366
srn_5010_Teg3399.49196102772636277283111962e-97 357
srn_3390_Teg7100.00193001843422184361411932e-97 357
srn_3190_Teg6899.49195101725425172561911957e-97 355
srn_4740_sprA393.972321222653327265355812303e-95 350
srn_1640_rsaD100.001770072054072071611772e-88 327
srn_2410_Sau6524100.00173001134230113440211733e-86 320
srn_4090_sprF398.84173112265473226564511722e-82 307
srn_2950_Teg698.84172201430496143066711722e-82 307
srn_9480_sRNA334100.00163002268244226840611639e-81 302
srn_3050_sRNA24299.39163101546938154710011634e-79 296
srn_2460_Teg5899.39163101165013116517511634e-79 296
srn_1550_Teg4999.391631067965367981511634e-79 296
srn_2550_Teg80100.00159001200809120096711592e-78 294
srn_9340_sRNA287100.00156001960799196095411567e-77 289
srn_1070_Sau41100.001560047648347663811567e-77 289
srn_4460_Teg2697.59166402490411249057611669e-76 285
srn_4160_Sau2597.60167312297728229789311679e-76 285
srn_4160_Sau25100.001050051267851278210512e-48 195
srn_4160_Sau2598.20111112181418218152711116e-48 193
srn_4160_Sau25100.001040055695855706110416e-48 193
srn_4160_Sau2599.02102012003424200352411021e-44 182
srn_2330_Sau11100.00153001087701108785311533e-75 283
srn_4120_Teg20100.00149002272680227282811496e-73 276
srn_3780_Teg13100.00148002080775208092211482e-72 274
srn_3040_Sau50100.00148001542964154311111482e-72 274
srn_2290_sbrA100.00148001044681104482811482e-72 274
srn_2660_sRNA21999.33149011295730129587811481e-70 268
srn_2580_Teg103100.00145001217716121786011451e-70 268
srn_2200_Sau6053100.00145001025938102608211451e-70 268
srn_3210_sRNA25497.44156401728938172909311563e-70 267
srn_4670_RsaOT99.32146102608813260895811461e-69 265
srn_1510_rsaA100.001430064359364373511431e-69 265
srn_3610_SprC100.00142001958510195865111424e-69 263
srn_3550_Teg7599.31145011915892191603511452e-68 261
srn_0590_sRNA37100.001400028571028584911406e-68 259
srn_0510_rsaG100.001370025631525645111373e-66 254
srn_3800_sprD97.93145302087005208714911451e-65 252
srn_3830_sprF199.28138102090853209099011383e-65 250
srn_3820_SprX96.67150112088617208876611464e-64 246
srn_3740_Sau6492100.00131002053977205410711316e-63 243
srn_1930.5_rsaOF100.00130002030099203022811302e-62 241
srn_1930.5_rsaOF90.291037311685621168664130311e-29 132
srn_3140_Teg15198.53136201630107163024211362e-62 241
srn_4590_Teg28100.00128002577396257752311283e-61 237
srn_2340_Sau59100.00128001089305108943211283e-61 237
srn_1910_rsaH100.001280085428785441411283e-61 237
srn_2500_sRNA20789.47190145117243311726201383231e-60 235
srn_2500_sRNA20791.07168141394785394952792456e-58 226
srn_2500_sRNA20784.211902351695074169525619012e-43 178
srn_2500_sRNA20789.861381123948883950221242612e-42 174
srn_2500_sRNA20789.291401232665015266515114018e-42 172
srn_2500_sRNA20793.751124223890322389140190791e-39 165
srn_2500_sRNA20792.59108808429248430312451388e-37 156
srn_2500_sRNA20791.071129113806141380725801904e-35 150
srn_2500_sRNA20784.421541461071860107201215286e-33 143
srn_2500_sRNA20788.6011411220410232041136190793e-31 137
srn_2500_sRNA20788.3911212114698401469951190804e-30 134
srn_2500_sRNA20786.7311312220301602030270190798e-27 122
srn_1760_sRNA14999.211271078585478598011275e-59 230
srn_1520_Sau76100.001220064375364387411226e-58 226
srn_4420_Teg25100.00121002444905244502511212e-57 224
srn_2830_SbrB100.00118001368620136873711181e-55 219
srn_3870_sRNA29687.9818321184847484865511831e-54 215
srn_3870_sRNA29688.8915316120316502031802321833e-46 187
srn_3870_sRNA29693.221188020316092031726491662e-42 174
srn_3870_sRNA29682.701852741380539138072018316e-38 159
srn_3870_sRNA29682.161852841469845147002611833e-36 154
srn_3870_sRNA29691.671088189169389179911081e-34 148
srn_3870_sRNA29691.671088116990517001110811e-34 148
srn_3870_sRNA29691.43105901098083109818741082e-33 145
srn_3860_sRNA31598.36122202125955212607611221e-54 215
srn_2240_sprF2100.00116001036443103655811161e-54 215
srn_4390_rsaOG100.00111002430692243080211118e-52 206
srn_3600_SprB98.29117111946059194617511163e-51 204
srn_4440_sRNA361100.00109002478011247811911091e-50 202
srn_2540_sRNA210100.00106001182111118221611065e-49 196
srn_2400_Teg37as99.08109101132303113241111095e-49 196
srn_3460_Sau594999.07107011868853186895911062e-47 191
srn_3460_Sau5949100.00450017172071717251106624e-1584.2
srn_5000_Sau1398.08104202771985277208811041e-44 182
srn_1770_rsaOC98.9999107858757859731992e-43 178
srn_0880_Sau5971100.0096004199424200371962e-43 178
srn_4610_sRNA377100.009500109818810982829516e-43 176
srn_4610_sRNA377100.0095008009908010849516e-43 176
srn_4610_sRNA37797.899520203178720318819511e-39 165
srn_4610_sRNA37797.8995208918008918949511e-39 165
srn_4610_sRNA37797.879420286683528669289525e-39 163
srn_4610_sRNA37796.8495306715326716261956e-38 159
srn_4610_sRNA37796.849530138046013805541956e-38 159
srn_4610_sRNA37796.849530147001114701059516e-38 159
srn_4610_sRNA37796.849530107222910723239516e-38 159
srn_4610_sRNA37796.849530258050225805961956e-38 159
srn_4610_sRNA37796.157830266507526651528252e-28 128
srn_4610_sRNA37790.229281204119320412849331e-25 119
srn_4610_sRNA37794.3771401873917187398725956e-23 110
srn_2740_Teg10898.989810134195013420471986e-43 176
srn_0950_Sau63100.0091004422024422921911e-40 169
srn_4570_Teg2798.909110256076225608521915e-39 163
srn_4220_sRNA345100.008700235266423527501872e-38 161
srn_4220_sRNA34593.339032234702523471141875e-29 130
srn_1900_Sau1597.8392208536288537191926e-38 159
srn_3020_Teg65100.008200151600215160831821e-35 152
srn_0870_Teg38as100.0082004179484180291821e-35 152
srn_4290_sRNA348100.007900238543323855111795e-34 147
srn_4060_Sau6723100.007900225357222536501795e-34 147
srn_3110_Sau6353100.007600161752116175961762e-32 141
srn_1780_Sau6698.7379107885757886531792e-32 141
srn_4680_Sau19100.007500260938126094551758e-32 139
srn_3710_Sau6799100.006800201413920142061686e-28 126
srn_2610_Sau2498.597110125535212554221716e-28 126
srn_1930.2_rsaOF98.536810238914323892106813e-26 121
srn_1930.2_rsaOF97.066811238902923890956815e-24 113
srn_1930.2_rsaOF91.306941204102120410896716e-1893.5
srn_1570_RsaOW2100.006500229075222908166513e-26 121
srn_1570_RsaOW2100.006500199432619943906513e-26 121
srn_4540_sprAs2100.006200255557925556401621e-24 115
srn_4540_sprAs296.776220255137825514391623e-21 104
srn_4260_Sau3098.446410235739923574621645e-24 113
srn_0060_Sau65100.00580021750218071582e-22 108
srn_9490_sRNA337100.005700199432819943841578e-22 106
srn_9490_sRNA337100.005700229075422908101578e-22 106
srn_3700_Teg142100.005700199432819943841578e-22 106
srn_3700_Teg142100.005700229075422908101578e-22 106
srn_3590_sprAs1100.005700192998919300451578e-22 106
srn_4840_RsaOV100.005500269646426965181551e-20 102
srn_1930.1_rsaOF98.2858108556738557301581e-20 102
srn_1930.1_rsaOF91.6760318557318557901581e-1482.4
srn_4170_Sau23100.005400231626623163191544e-20 100
srn_0960_Teg14798.2156104443364443911561e-1999.0
srn_4530_sprAs2prime98.185510255138225514361555e-1997.1
srn_3770_Teg122100.005200208069920807501525e-1997.1
srn_1020_sRNA90100.0052004629244629751525e-1997.1
srn_1060_Teg149100.0051004760184760681512e-1895.3
srn_1460_sRNA128100.0047005978775979231473e-1687.9
srn_1000_sRNA88100.0046004541914542361461e-1586.1
Biogenouest IRISA INRIA Université de Rennes 1 Région Bretagne

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