Staphylococcus aureus subsp aureus str MRSA252

The prediction was done using a set of srn genes identified from SRD RNA-seq analysis.

Numbers of SRD’S predicted srn sequences =

subject_seq_id	identity	length	mismatch	gapopen	query_start	query_end	subject_start	subject_end	evalue	bitscore
srn_4470_RsaX28	99.83	1177	2	0	2538824	2540000	1	1177	0.0	2163
srn_1670_Teg20as	99.41	1009	6	0	722368	723376	1	1009	0.0	1831
srn_0770_Teg18as	99.08	865	8	0	357995	358859	1	865	0.0	1554
srn_1580_sbrC	95.55	651	27	2	686934	687583	197	846	0.0	1040
srn_5020_sRNA401	99.65	568	2	0	2805420	2805987	1	568	0.0	1038
srn_3790_sRNA301	99.62	532	2	0	2124857	2125388	1	532	0.0	972
srn_3910_RNAIII	99.81	517	0	1	2183350	2183866	1	516	0.0	948
srn_1590_rsaC	95.72	537	22	1	687027	687562	1	537	0.0	863
srn_2130_rsaE	98.03	458	9	0	1013518	1013975	2	459	0.0	797
srn_4330_Teg36as	97.82	458	4	1	2451383	2451840	1	452	0.0	785
RNaseP	98.62	435	6	0	1549046	1549480	1	435	0.0	771
srn_0860_RsaOB	98.81	421	5	0	403626	404046	1	421	0.0	750
srn_5070_RsaX25	98.68	379	5	0	2850971	2851349	1	379	0.0	673
srn_3840_sprG1	99.46	367	2	0	2130107	2130473	1	367	0.0	667
srn_2250_sprG4	99.19	369	3	0	1046964	1047332	1	369	0.0	665
srn_2880_RsaOQ	99.18	366	3	0	1437483	1437848	1	366	0.0	660
srn_0280_sRNA16	98.12	372	7	0	123871	124242	1	372	0.0	649
tmRNA	98.89	359	4	0	883681	884039	1	359	0.0	641
srn_4050_artR	99.71	346	1	0	2291029	2291374	1	346	0.0	634
srn_3300_Teg70	99.14	348	3	0	1807207	1807554	1	348	1e-178	627
srn_4770_sRNA385	98.02	353	2	1	2694190	2694542	85	432	5e-173	608
srn_4770_sRNA385	92.68	82	6	0	2693805	2693886	1	82	1e-25	119
srn_2560_sRNA212	98.43	319	4	1	1219433	1219751	1	318	1e-158	560
srn_1990_Teg40as	99.67	300	1	0	899529	899828	1	300	3e-155	549
srn_4830_Sau6072	100.00	295	0	0	2707917	2708211	1	295	4e-154	545
srn_3320_sRNA264	100.00	283	0	0	1824348	1824630	1	283	2e-147	523
srn_4340_Teg23	97.38	305	8	0	2452224	2452528	3	307	2e-146	520
srn_1350_Teg45	98.63	291	4	0	581372	581662	1	291	3e-145	516
srn_3260_Teg69	99.27	273	2	0	1774432	1774704	1	273	1e-138	494
srn_2530_sRNA209	95.72	304	11	2	1193614	1193915	1	304	7e-137	488
srn_4520_RsaX20	99.62	262	1	0	2578450	2578711	1	262	4e-134	479
srn_3360_sRNA267	97.17	283	6	2	1851141	1851421	1	283	1e-133	477
srn_4100_sprG3	99.61	255	1	0	2306018	2306272	1	255	3e-130	466
4.5S	99.60	253	1	0	509395	509647	1	253	4e-129	462
srn_4000_sRNA326	98.81	253	3	0	2277656	2277908	1	253	9e-126	451
srn_3280_sRNA260	97.68	259	6	0	1794238	1794496	1	259	4e-124	446
srn_3350_sRNA266	98.78	246	3	0	1839347	1839592	1	246	7e-122	438
srn_2970_sRNA235	98.33	240	4	0	1481953	1482192	1	240	7e-117	422
srn_4550_sprA2	99.14	233	2	0	2596490	2596722	1	233	3e-116	420
srn_2450_Sau6229	97.91	239	5	0	1169107	1169345	1	239	1e-114	414
srn_3950_Teg16	99.56	225	1	0	2201922	2202146	1	225	2e-113	411
srn_0030_Teg35	99.56	226	0	1	12490	12714	1	226	2e-113	411
srn_3570_sRNA284	93.12	276	18	1	89776	90051	275	1	3e-111	403
srn_3570_sRNA284	94.87	78	4	0	89638	89715	347	270	8e-27	122
6S	100.00	218	0	0	1770968	1771185	1	218	3e-111	403
srn_4190_sRNA342	94.59	259	14	0	2357795	2358053	1	259	9e-111	401
srn_3490_RsaOE	99.55	221	0	1	1933839	1934059	1	220	9e-111	401
srn_2230_sprG2	96.68	241	8	0	1046707	1046947	1	241	9e-111	401
srn_4300_sRNA349	93.94	264	16	0	2424966	2425229	1	264	3e-110	399
srn_4300_sRNA349	87.73	163	15	3	1108455	1108617	106	263	1e-45	185
srn_1490_Sau6477	100.00	216	0	0	633458	633673	1	216	3e-110	399
srn_0220_sRNA261	100.00	216	0	0	55650	55865	1	216	3e-110	399
srn_0220_sRNA261	100.00	216	0	0	1796273	1796488	1	216	3e-110	399
srn_4980_Teg32	98.22	225	3	1	2792460	2792684	1	224	5e-108	392
srn_0930_Teg76	98.21	223	4	0	441079	441301	1	223	2e-107	390
srn_0260_Teg15as	95.49	244	11	0	113646	113889	1	244	2e-107	390
srn_0440_rsaK	99.53	212	1	0	218126	218337	1	212	3e-106	387
srn_3660_Sau6515	99.06	213	2	0	2022565	2022777	1	213	3e-105	383
srn_3580_SprA1	100.00	207	0	0	1972641	1972847	1	207	3e-105	383
srn_3580_SprA1	82.71	214	25	10	751323	751532	1	206	5e-44	180
srn_1210_sRNA106	99.51	205	1	0	533010	533214	1	205	2e-102	374
srn_0050_Teg1	96.07	229	9	0	15797	16025	1	229	2e-102	374
srn_9500_sRNA368	96.80	219	7	0	2580780	2580998	84	302	3e-100	366
srn_3390_Teg7	100.00	193	0	0	1883004	1883196	1	193	2e-97	357
srn_3190_Teg68	99.49	195	1	0	1759768	1759962	1	195	7e-97	355
srn_5010_Teg33	98.98	196	2	0	2800256	2800451	1	196	9e-96	351
srn_1080_RsaX05	97.56	205	5	0	478529	478733	1	205	9e-96	351
srn_1810_Teg51	97.10	207	5	1	821079	821285	1	206	1e-94	348
srn_2520_Teg60	93.81	226	4	1	1191801	1192026	1	216	1e-89	331
srn_1640_rsaD	100.00	177	0	0	702919	703095	1	177	2e-88	327
srn_4110_sRNA335	95.96	198	8	0	2308298	2308495	1	198	7e-87	322
srn_4090_sprF3	100.00	172	0	0	2305947	2306118	1	172	9e-86	318
srn_4740_sprA3	91.34	231	16	4	2683128	2683357	3	230	4e-84	313
srn_2950_Teg6	99.42	172	1	0	1463348	1463519	1	172	4e-84	313
srn_2410_Sau6524	98.27	173	3	0	1144808	1144980	1	173	3e-81	303
srn_3050_sRNA242	100.00	163	0	0	1579812	1579974	1	163	1e-80	302
srn_2550_Teg80	100.00	159	0	0	1212598	1212756	1	159	2e-78	294
srn_1070_Sau41	100.00	156	0	0	477826	477981	1	156	7e-77	289
srn_2330_Sau11	100.00	153	0	0	1098132	1098284	1	153	3e-75	283
srn_3040_Sau50	100.00	148	0	0	1575838	1575985	1	148	2e-72	274
srn_4160_Sau25	95.81	167	7	0	2337292	2337458	1	167	3e-71	270
srn_4160_Sau25	98.20	111	1	1	2218809	2218918	1	111	6e-48	193
srn_4160_Sau25	100.00	104	0	0	559872	559975	104	1	6e-48	193
srn_4160_Sau25	99.05	105	1	0	514144	514248	105	1	8e-47	189
srn_4160_Sau25	97.06	102	2	1	2041364	2041464	1	102	3e-41	171
srn_4120_Teg20	99.33	149	1	0	2311741	2311889	1	149	3e-71	270
srn_3780_Teg13	99.32	148	1	0	2118144	2118291	1	148	1e-70	268
srn_3550_Teg75	100.00	145	0	0	1958902	1959046	1	145	1e-70	268
srn_2660_sRNA219	99.33	149	0	1	1308000	1308148	1	148	1e-70	268
srn_2580_Teg103	100.00	145	0	0	1229975	1230119	1	145	1e-70	268
srn_0200_Teg4	100.00	145	0	0	49185	49329	1	145	1e-70	268
srn_4670_RsaOT	99.32	146	1	0	2649719	2649864	1	146	1e-69	265
srn_1510_rsaA	100.00	143	0	0	643682	643824	1	143	1e-69	265
srn_2200_Sau6053	99.31	145	1	0	1036383	1036527	1	145	4e-69	263
srn_3800_sprD	98.62	145	2	0	2126256	2126400	1	145	2e-67	257
srn_0510_rsaG	100.00	137	0	0	248417	248553	1	137	3e-66	254
srn_2290_sbrA	97.32	149	3	1	1055203	1055351	1	148	1e-65	252
srn_3830_sprF1	99.28	138	1	0	2130106	2130243	1	138	3e-65	250
srn_3820_SprX	96.67	150	1	1	2127869	2128018	1	146	5e-64	246
srn_3820_SprX	94.00	150	4	2	1592002	1592150	1	146	8e-57	222
srn_3140_Teg151	99.26	136	1	0	1664353	1664488	1	136	5e-64	246
srn_1550_Teg49	94.38	160	9	0	673683	673842	1	160	5e-64	246
srn_4590_Teg28	100.00	128	0	0	2618297	2618424	1	128	3e-61	237
srn_3740_Sau6492	98.47	131	2	0	2091884	2092014	1	131	1e-59	231
srn_2340_Sau59	99.22	128	1	0	1099736	1099863	1	128	1e-59	231
srn_1910_rsaH	99.22	128	1	0	869815	869942	1	128	1e-59	231
srn_3210_sRNA254	93.59	156	6	4	1763281	1763432	1	156	5e-59	230
srn_1760_sRNA149	99.21	127	1	0	800012	800138	1	127	5e-59	230
srn_1520_Sau76	100.00	122	0	0	643842	643963	1	122	6e-58	226
srn_4460_Teg26	97.66	128	3	0	2528708	2528835	1	128	3e-56	220
srn_0590_sRNA37	95.04	141	6	1	278592	278732	1	140	3e-56	220
srn_4420_Teg25	99.17	121	1	0	2480663	2480783	1	121	1e-55	219
srn_2830_SbrB	100.00	118	0	0	1398922	1399039	1	118	1e-55	219
srn_3870_sRNA296	88.52	183	16	3	2173500	2173677	1	183	4e-55	217
srn_3870_sRNA296	87.25	149	18	1	1082368	1082515	35	183	1e-40	169
srn_3870_sRNA296	85.03	167	18	5	2459410	2459570	166	1	5e-39	163
srn_3870_sRNA296	92.59	108	8	0	848940	849047	1	108	8e-37	156
srn_3870_sRNA296	82.07	184	28	5	2459335	2459514	183	1	1e-35	152
srn_3870_sRNA296	90.74	108	10	0	2459351	2459458	108	1	2e-33	145
srn_3870_sRNA296	82.57	109	15	2	2855673	2855778	1	108	6e-18	93.5
srn_3860_sRNA315	97.54	122	3	0	2166461	2166582	1	122	6e-53	209
srn_2500_sRNA207	84.68	222	19	6	862262	862483	207	1	2e-52	207
srn_2500_sRNA207	86.14	202	16	5	1108506	1108707	190	1	2e-52	207
srn_2500_sRNA207	84.83	211	26	5	309201	309407	79	287	2e-52	207
srn_2500_sRNA207	84.47	219	21	7	2078961	2079178	207	1	3e-51	204
srn_2500_sRNA207	85.71	175	17	4	2068238	2068410	247	79	2e-43	178
srn_4390_rsaOG	100.00	111	0	0	2467075	2467185	1	111	8e-52	206
srn_2240_sprF2	98.28	116	2	0	1046890	1047005	1	116	3e-51	204
srn_2400_Teg37as	99.08	109	1	0	1142881	1142989	1	109	5e-49	196
srn_5000_Sau13	99.04	104	1	0	2799605	2799708	1	104	3e-46	187
srn_4440_sRNA361	97.25	109	3	0	2514406	2514514	1	109	1e-45	185
srn_2540_sRNA210	98.11	106	2	0	1194121	1194226	1	106	1e-45	185
srn_1770_rsaOC	98.99	99	1	0	800033	800131	1	99	2e-43	178
srn_4610_sRNA377	100.00	95	0	0	1136919	1137013	95	1	6e-43	176
srn_4610_sRNA377	100.00	95	0	0	1108618	1108712	95	1	6e-43	176
srn_4610_sRNA377	100.00	95	0	0	849048	849142	95	1	6e-43	176
srn_4610_sRNA377	97.89	95	2	0	2726888	2726982	95	1	1e-39	165
srn_4610_sRNA377	97.89	95	2	0	438429	438523	1	95	1e-39	165
srn_4610_sRNA377	97.89	95	2	0	2254186	2254280	95	1	1e-39	165
srn_4610_sRNA377	97.89	95	2	0	2259149	2259243	1	95	1e-39	165
srn_4610_sRNA377	96.84	95	3	0	2882210	2882304	95	1	6e-38	159
srn_4610_sRNA377	96.84	95	3	0	446318	446412	1	95	6e-38	159
srn_4610_sRNA377	96.84	95	3	0	552259	552353	1	95	6e-38	159
srn_4610_sRNA377	96.84	95	3	0	291349	291443	95	1	6e-38	159
srn_4610_sRNA377	95.79	95	4	0	1486161	1486255	95	1	3e-36	154
srn_4610_sRNA377	96.74	92	3	0	2550366	2550457	4	95	3e-36	154
srn_4610_sRNA377	96.67	90	3	0	1743774	1743863	6	95	4e-35	150
srn_4610_sRNA377	94.74	95	5	0	2896509	2896603	95	1	1e-34	148
srn_4610_sRNA377	90.53	95	9	0	2459256	2459350	1	95	6e-28	126
srn_2740_Teg108	98.98	98	1	0	1368634	1368731	1	98	6e-43	176
srn_4570_Teg27	100.00	91	0	0	2601646	2601736	1	91	1e-40	169
srn_0950_Sau63	100.00	91	0	0	447634	447724	1	91	1e-40	169
srn_1900_Sau15	97.83	92	2	0	869156	869247	1	92	6e-38	159
srn_4220_sRNA345	98.85	87	1	0	2384565	2384651	1	87	8e-37	156
srn_4220_sRNA345	100.00	60	0	0	2387118	2387177	28	87	2e-23	111
srn_3020_Teg65	100.00	82	0	0	1549249	1549330	1	82	1e-35	152
srn_0870_Teg38as	100.00	82	0	0	407278	407359	1	82	1e-35	152
srn_4290_sRNA348	100.00	79	0	0	2421519	2421597	1	79	5e-34	147
srn_4060_Sau6723	100.00	79	0	0	2292190	2292268	1	79	5e-34	147
srn_1780_Sau66	98.73	79	1	0	802733	802811	1	79	2e-32	141
srn_4680_Sau19	100.00	75	0	0	2650287	2650361	1	75	8e-32	139
srn_1930.5_rsaOF	100.00	72	0	0	2068297	2068368	59	130	4e-30	134
srn_1930.5_rsaOF	93.44	61	4	0	2726819	2726879	59	119	2e-17	91.6
srn_2610_Sau24	100.00	71	0	0	1267671	1267741	1	71	1e-29	132
srn_3710_Sau6799	100.00	68	0	0	2052113	2052180	1	68	6e-28	126
srn_1930.2_rsaOF	98.53	68	1	0	2425116	2425183	68	1	3e-26	121
srn_1930.2_rsaOF	95.59	68	3	0	309302	309369	1	68	6e-23	110
srn_1930.2_rsaOF	86.15	65	9	0	1763434	1763498	65	1	3e-11	71.3
srn_4260_Sau30	100.00	64	0	0	2393484	2393547	1	64	1e-25	119
srn_4540_sprAs2	100.00	62	0	0	2596463	2596524	1	62	1e-24	115
srn_4540_sprAs2	96.77	62	2	0	2592242	2592303	1	62	3e-21	104
srn_3590_sprAs1	100.00	57	0	0	1972812	1972868	1	57	8e-22	106
srn_1570_RsaOW2	96.83	63	1	1	1908325	1908386	3	65	3e-21	104
srn_4840_RsaOV	100.00	55	0	0	2724000	2724054	1	55	1e-20	102
srn_0060_Sau65	98.28	58	1	0	21715	21772	1	58	1e-20	102
srn_4170_Sau23	100.00	54	0	0	2355725	2355778	1	54	4e-20	100
srn_0960_Teg147	100.00	53	0	0	450567	450619	4	56	1e-19	99.0
srn_4530_sprAs2prime	98.18	55	1	0	2592246	2592300	1	55	5e-19	97.1
srn_3770_Teg122	100.00	52	0	0	2118068	2118119	1	52	5e-19	97.1
srn_1930.1_rsaOF	96.55	58	2	0	291291	291348	1	58	5e-19	97.1
srn_1930.1_rsaOF	94.83	58	3	0	446413	446470	58	1	2e-17	91.6
srn_1930.1_rsaOF	92.59	54	3	1	829413	829466	57	5	6e-13	76.8
srn_1020_sRNA90	100.00	52	0	0	466918	466969	1	52	5e-19	97.1
srn_1060_Teg149	100.00	51	0	0	477361	477411	1	51	2e-18	95.3
srn_9490_sRNA337	98.15	54	0	1	1908329	1908381	57	4	6e-18	93.5
srn_3700_Teg142	98.15	54	0	1	1908329	1908381	57	4	6e-18	93.5
srn_1460_sRNA128	100.00	47	0	0	602611	602657	1	47	3e-16	87.9
srn_3850_Teg123	92.00	50	4	0	2161014	2161063	13	62	3e-11	71.3