Staphylococcus lugdunensis HKU09-01

The prediction was done using a set of srn genes identified from SRD curated sRNAs.

Numbers of SRD’S predicted srn sequences =

subject_seq_id	identity	length	mismatch	gapopen	query_start	query_end	subject_start	subject_end	evalue	bitscore
tmRNA	92.54	362	21	6	2113108	2113466	359	1	3e-144	514
4.5S	92.68	246	18	0	2510155	2510400	246	1	2e-96	355
srn_1430_sRNA126	87.63	291	36	0	2418479	2418769	295	5	2e-91	339
RNAseP	88.65	282	23	8	1497282	1497561	435	161	3e-90	335
srn_3960_sRNA323	98.37	184	3	0	2452904	2453087	1	184	5e-87	324
srn_3960_sRNA323	97.83	184	4	0	1131231	1131414	184	1	3e-85	318
srn_3960_sRNA323	97.83	184	4	0	1012301	1012484	184	1	3e-85	318
srn_3960_sRNA323	97.83	184	4	0	916572	916755	184	1	3e-85	318
srn_3960_sRNA323	97.83	184	4	0	2447463	2447646	1	184	3e-85	318
srn_3960_sRNA323	97.83	184	4	0	2505399	2505582	1	184	3e-85	318
6S	91.32	219	17	2	1335029	1335246	218	1	3e-79	298
srn_4830_Sau6072	85.66	244	26	9	496468	496706	240	1	3e-64	248
srn_1410_Teg77	91.50	153	9	4	2421398	2421550	149	1	6e-52	207
srn_2130_rsaE	98.26	115	2	0	1940872	1940986	199	85	3e-50	202
srn_3550_Teg75	92.91	141	3	5	1177670	1177805	145	7	3e-49	198
srn_9330_sRNA273	97.39	115	3	0	529075	529189	115	1	1e-48	196
srn_1640_rsaD	89.54	153	13	3	2258792	2258942	176	25	6e-47	191
srn_3040_Sau50	89.73	146	15	0	1472426	1472571	148	3	8e-46	187
srn_1210_sRNA106	87.50	160	18	2	2479716	2479873	160	1	1e-44	183
srn_3080_Teg66	91.18	136	7	4	1458574	1458705	135	1	1e-43	180
srn_3080_Teg66	85.84	113	9	5	1188253	1188359	129	18	1e-23	113
srn_1940_sRNA165	81.50	227	31	6	2116377	2116601	226	9	2e-42	176
srn_9260_sRNA178	97.00	100	3	0	529080	529179	100	1	3e-40	169
srn_1690_sRNA143	86.39	147	20	0	2234360	2234506	206	60	5e-38	161
srn_1270_Teg44	88.72	133	12	3	2462883	2463013	225	94	2e-37	159
srn_9300_sRNA237	96.81	94	3	0	529082	529175	94	1	6e-37	158
srn_4160_Sau25	87.97	133	13	3	916056	916187	131	1	8e-36	154
srn_4160_Sau25	92.31	104	6	2	1130744	1130846	103	1	1e-33	147
srn_4160_Sau25	91.35	104	7	2	1011814	1011916	103	1	6e-32	141
srn_4160_Sau25	90.65	107	7	3	2448031	2448136	1	105	2e-31	139
srn_4160_Sau25	90.65	107	7	3	2453472	2453577	1	105	2e-31	139
srn_4160_Sau25	90.65	107	7	3	2505968	2506073	1	105	2e-31	139
srn_0860_RsaOB	86.01	143	19	1	2577005	2577146	360	218	3e-35	152
srn_4390_rsaOG	90.52	116	6	2	783849	783964	111	1	4e-34	148
srn_3510_Teg74	85.71	147	13	6	1188225	1188364	276	131	4e-34	148
srn_2670_Sau12	90.91	110	10	0	1659396	1659505	112	3	4e-34	148
srn_2030_Teg52	90.00	120	5	3	2089563	2089681	114	1	4e-34	148
srn_3650_sRNA289	91.26	103	8	1	1150565	1150666	127	25	2e-31	139
srn_4010_sRNA327	87.93	116	13	1	958684	958799	192	78	3e-30	135
srn_4270_sRNA347	93.41	91	4	1	849844	849932	91	1	1e-29	134
srn_4140_sRNA338	100.00	68	0	0	1134648	1134715	68	1	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	1015690	1015757	68	1	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	919890	919957	68	1	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	2444166	2444233	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	2449630	2449697	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	2502126	2502193	1	68	2e-27	126
srn_4240_Teg84	93.75	80	3	2	853446	853524	79	1	3e-25	119
srn_3890_Teg21as	100.00	64	0	0	2079112	2079175	1	64	3e-25	119
srn_3870_sRNA296	86.24	109	12	3	2526663	2526768	32	140	4e-24	115
srn_3870_sRNA296	84.00	100	13	2	2097948	2098044	35	134	2e-17	93.5
srn_3150_Teg83	88.42	95	4	4	1413900	1413988	98	5	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	2503347	2503404	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	2450851	2450908	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	2445387	2445444	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	918679	918736	1	58	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	1014479	1014536	1	58	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	1133437	1133494	1	58	6e-22	108
srn_9470_sRNA322	100.00	55	0	0	1133444	1133498	55	1	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	1014486	1014540	55	1	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	918686	918740	55	1	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	2445383	2445437	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	2450847	2450901	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	2503343	2503397	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	2503352	2503406	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	2450856	2450910	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	2445392	2445446	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	918677	918731	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	1014477	1014531	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	1133435	1133489	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	1133442	1133496	55	1	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	1014484	1014538	55	1	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	918684	918738	55	1	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	2445385	2445439	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	2450849	2450903	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	2503345	2503399	1	55	3e-20	102
srn_2440_Teg56	80.71	140	20	7	1817774	1817909	166	30	3e-20	102
srn_3470_sRNA274	92.65	68	3	1	1208245	1208310	70	3	1e-18	97.1
srn_0890_sRNA71	90.41	73	3	2	2566371	2566443	72	4	2e-17	93.5
srn_2320_sRNA195	92.31	65	2	3	2182881	2182944	92	154	2e-16	89.8
srn_2320_sRNA195	90.32	62	4	2	1580560	1580620	94	154	1e-13	80.5
srn_0930_Teg76	94.64	56	3	0	2554588	2554643	59	4	8e-16	87.9
srn_1420_Sau60	83.33	96	12	4	2419474	2419566	95	1	3e-15	86.1
srn_3480_sRNA275	87.67	73	7	2	2526666	2526738	230	160	1e-14	84.2
srn_1460_sRNA128	97.87	47	1	0	2407421	2407467	47	1	4e-14	82.4
srn_3850_Teg123	91.38	58	1	1	2343288	2343345	11	64	2e-12	76.8
srn_3160_RsaOD	81.05	95	14	2	1390625	1390715	95	1	2e-11	73.1
srn_0700_sRNA45	92.31	52	2	1	2526704	2526755	50	1	2e-11	73.1