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SRD: Staphylococcal Regulatory RNAs Database
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sRNAs in SRDs reference strains
Staphylococcus aureus subsp. aureus str. JKD6008 (NC_017341.1)
Staphylococcus aureus subsp. aureus N315 (BA000018.3)
Staphylococcus aureus subsp. aureus NCTC 8325 (NC_007795.1)
Staphylococcus aureus subsp. aureus str. Newman (NC_009641.1)
Staphylococcus aureus subsp. aureus str. USA300_FPR3757 (CP000255.1)
SRD's RNAseq transcribed sRNA
Browse predictions
SRD's curated sRNA in S. aureus strains
Staphylococcus_aureus_MSSA476
Staphylococcus_aureus_RF122
Staphylococcus_aureus_str_502A
Staphylococcus_aureus_str_M1
Staphylococcus_aureus_str_NRS100
Staphylococcus_aureus_str_XN108
Staphylococcus_aureus_subsp_aureus_str_COL
Staphylococcus_aureus_subsp_aureus_str_JH1
Staphylococcus_aureus_subsp_aureus_str_JH9
Staphylococcus_aureus_subsp_aureus_str_M013
Staphylococcus_aureus_subsp_aureus_str_MRSA252
Staphylococcus_aureus_subsp_aureus_str_MSHR1132
Staphylococcus_aureus_subsp_aureus_str_MW2
Staphylococcus_aureus_subsp_aureus_str_Mu3
Staphylococcus_aureus_subsp_aureus_str_Mu50
Staphylococcus_aureus_subsp_aureus_str_ST398
Staphylococcus_aureus_subsp_aureus_str_USA300_TCH1516
SRD's curated sRNA in other Staphylococcus species
Staphylococcus_carnosus_subsp__carnosus_TM300
Staphylococcus_epidermidis_ATCC_12228
Staphylococcus_epidermidis_RP62A
Staphylococcus_haemolyticus_JCSC1435
Staphylococcus_lugdunensis_HKU09-01
Staphylococcus_pasteuri_SP1
Staphylococcus_pseudintermedius_ED99
Staphylococcus_saprophyticus_subsp__saprophyticus_ATCC_15305
Staphylococcus_warneri_SG1
Staphylococcus_xylosus_strain_HKUOPL8
SRD's transcribed sRNA in S. aureus strains
Staphylococcus_aureus_MSSA476_MSSA476
Staphylococcus_aureus_RF122_RF122
Staphylococcus_aureus_str_502A
Staphylococcus_aureus_str_M1
Staphylococcus_aureus_str_NRS100
Staphylococcus_aureus_str_XN108
Staphylococcus_aureus_subsp_aureus_str_COL
Staphylococcus_aureus_subsp_aureus_str_JH1
Staphylococcus_aureus_subsp_aureus_str_JH9
Staphylococcus_aureus_subsp_aureus_str_M013
Staphylococcus_aureus_subsp_aureus_str_MRSA252
Staphylococcus_aureus_subsp_aureus_str_MSHR1132
Staphylococcus_aureus_subsp_aureus_str_MW2
Staphylococcus_aureus_subsp_aureus_str_Mu3
Staphylococcus_aureus_subsp_aureus_str_Mu50
Staphylococcus_aureus_subsp_aureus_str_ST398
Staphylococcus_aureus_subsp_aureus_str_USA300_TCH1516
SRD's transcribed sRNA in other Staphylococcus species
Staphylococcus_carnosus_subsp__carnosus_TM300
Staphylococcus_epidermidis_ATCC_12228
Staphylococcus_epidermidis_RP62A
Staphylococcus_haemolyticus_JCSC1435
Staphylococcus_lugdunensis_HKU09-01
Staphylococcus_pasteuri_SP1
Staphylococcus_pseudintermedius_ED99
Staphylococcus_saprophyticus_subsp__saprophyticus_ATCC_15305
Staphylococcus_warneri_SG1
Staphylococcus_xylosus_strain_HKUOPL8
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IntaRNA
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References
Query parameters
Paste your RNA sequence
FASTA format. Length is limited to 20Mb
Or select a file
FASTA format. File size is limited to 20Mb
sRNA sequence
>srn_9530_sRNA402 acauacuuaaucaacaugugaaauauauaugcugacuacuuaacugcgcaugauuaaaucuauauauuucaauaucauggagacacgaaaacuaccaucauauaaucaaaaaagacuaguaugugacaucauuccucacauacuagccccuauauuuacuuuauuauuuacucguuuuguaugg
FASTA format. Length is limited to 20Mb
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