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SRD: Staphylococcal Regulatory RNAs Database
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sRNAs in SRDs reference strains
Staphylococcus aureus subsp. aureus str. JKD6008 (NC_017341.1)
Staphylococcus aureus subsp. aureus N315 (BA000018.3)
Staphylococcus aureus subsp. aureus NCTC 8325 (NC_007795.1)
Staphylococcus aureus subsp. aureus str. Newman (NC_009641.1)
Staphylococcus aureus subsp. aureus str. USA300_FPR3757 (CP000255.1)
SRD's RNAseq transcribed sRNA
Browse predictions
SRD's curated sRNA in S. aureus strains
Staphylococcus_aureus_MSSA476
Staphylococcus_aureus_RF122
Staphylococcus_aureus_str_502A
Staphylococcus_aureus_str_M1
Staphylococcus_aureus_str_NRS100
Staphylococcus_aureus_str_XN108
Staphylococcus_aureus_subsp_aureus_str_COL
Staphylococcus_aureus_subsp_aureus_str_JH1
Staphylococcus_aureus_subsp_aureus_str_JH9
Staphylococcus_aureus_subsp_aureus_str_M013
Staphylococcus_aureus_subsp_aureus_str_MRSA252
Staphylococcus_aureus_subsp_aureus_str_MSHR1132
Staphylococcus_aureus_subsp_aureus_str_MW2
Staphylococcus_aureus_subsp_aureus_str_Mu3
Staphylococcus_aureus_subsp_aureus_str_Mu50
Staphylococcus_aureus_subsp_aureus_str_ST398
Staphylococcus_aureus_subsp_aureus_str_USA300_TCH1516
SRD's curated sRNA in other Staphylococcus species
Staphylococcus_carnosus_subsp__carnosus_TM300
Staphylococcus_epidermidis_ATCC_12228
Staphylococcus_epidermidis_RP62A
Staphylococcus_haemolyticus_JCSC1435
Staphylococcus_lugdunensis_HKU09-01
Staphylococcus_pasteuri_SP1
Staphylococcus_pseudintermedius_ED99
Staphylococcus_saprophyticus_subsp__saprophyticus_ATCC_15305
Staphylococcus_warneri_SG1
Staphylococcus_xylosus_strain_HKUOPL8
SRD's transcribed sRNA in S. aureus strains
Staphylococcus_aureus_MSSA476_MSSA476
Staphylococcus_aureus_RF122_RF122
Staphylococcus_aureus_str_502A
Staphylococcus_aureus_str_M1
Staphylococcus_aureus_str_NRS100
Staphylococcus_aureus_str_XN108
Staphylococcus_aureus_subsp_aureus_str_COL
Staphylococcus_aureus_subsp_aureus_str_JH1
Staphylococcus_aureus_subsp_aureus_str_JH9
Staphylococcus_aureus_subsp_aureus_str_M013
Staphylococcus_aureus_subsp_aureus_str_MRSA252
Staphylococcus_aureus_subsp_aureus_str_MSHR1132
Staphylococcus_aureus_subsp_aureus_str_MW2
Staphylococcus_aureus_subsp_aureus_str_Mu3
Staphylococcus_aureus_subsp_aureus_str_Mu50
Staphylococcus_aureus_subsp_aureus_str_ST398
Staphylococcus_aureus_subsp_aureus_str_USA300_TCH1516
SRD's transcribed sRNA in other Staphylococcus species
Staphylococcus_carnosus_subsp__carnosus_TM300
Staphylococcus_epidermidis_ATCC_12228
Staphylococcus_epidermidis_RP62A
Staphylococcus_haemolyticus_JCSC1435
Staphylococcus_lugdunensis_HKU09-01
Staphylococcus_pasteuri_SP1
Staphylococcus_pseudintermedius_ED99
Staphylococcus_saprophyticus_subsp__saprophyticus_ATCC_15305
Staphylococcus_warneri_SG1
Staphylococcus_xylosus_strain_HKUOPL8
Blast
IntaRNA
Contact
References
Organism
JKD6008
SRD identifier
Common name
IntaRNA
Start
End
Strand
Length
Other names
Experimental Validation
RNA-seq Validation
Category
Authors (references)
srn_4470
RsaX28
2532116
2533294
-
1179
sRNA363_Teg27_rsaX18
trans-encoded_RNA
Howden_BP_et_al.2013
Sequence
>JKD6008_srn_4470_RsaX28
tcaaaaaacaatacatagccattttgaactaacttgctaatcttttattgatattcaactatgttataaaaaaagcaaattgaccaaaatggaagtttgaatcaaaaaacattaaatgtacccatgacttaaattttatcgccattatttaagtttggacatacacttttgtcatcaaacgctgaaaattagtacgattgaaatcacttcttgttataaaaattcttagtagccctgttacaaaatattcgctacaaattattcaaatcaacaacaataaccatcaactaagaaattttaaacaatctactaaaaaataaagcgtttaaaagttctgtttagaaaacatcaagataagtataaacatctagaaaagtgaacatctaagaaaatccatctagttattgccgtaacaattagaataatcatttgaaaaagtgcattagacaacgaaattcaccatcaagataatgaagcaacaagaaacagcacacatcaatgaattaacaccttagattcatcatgagaaaatgcatggcacaactagatttaccatcaagataattcttaagcagcgaagaattaacatctagaaatgcataaacatcttagattttacatcaagagatgcgataactataaacaactagaaacgtcaccaagatagtgcaacaacaaagaatcagcatcttgaaatcgcactaacatctaagaatcaacatcaagtattatattaacatcatagataacttcatcaagacaggcatccacatctaagaaactcatctagaatagctaacacctaacatcaaagaatattcatcaagaacagtatctaacagaactttttgactatatatgaattaattatgttactagctaaatcatctattattaactttcacactcaatttctacatctaatatcaatttattaacaatagaattagcagcaacaagatattacttaaaattactcccccgaatttaaaatataaacaatgtaataattaagggtataaattgatttatgctgtaactaattaaatgtgtatggtatcttctaacatcatgaaacgcattttaatatagatatgtacatttaaaccttgagagatagattatagtaaactttagtacaaagtatgaattgctgaactccaatgactactatttgtc
Structure prediction (MFold)
External links to target and structure prediction
Target RNA2
RNA predator
MFold
CopraRNA
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